PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08609.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 431aa    MW: 46598.7 Da    PI: 7.9896
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08609.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06107128426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              + Cr++   G C++Gd+C++ H+
  Rsa1.0_08609.1_g00002.1 107 KVCRYWVD-GSCSHGDKCRYLHC 128
                              68******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033056IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-43055IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6104127IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4105129IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5107126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.107.0E-45127423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-6134173IPR001680WD40 repeat
SuperFamilySSF509782.38E-46135424IPR017986WD40-repeat-containing domain
PfamPF004001.6E-5137173IPR001680WD40 repeat
PROSITE profilePS5008214.418141182IPR001680WD40 repeat
PROSITE profilePS5029420.909141343IPR017986WD40-repeat-containing domain
PRINTSPR003206.8E-7160174IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
SMARTSM003203.4213250IPR001680WD40 repeat
SMARTSM003200.017257294IPR001680WD40 repeat
PfamPF004000.1262294IPR001680WD40 repeat
PROSITE profilePS5008211.511264303IPR001680WD40 repeat
PRINTSPR003206.8E-7281295IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4297334IPR001680WD40 repeat
PfamPF004000.0046299333IPR001680WD40 repeat
PRINTSPR003206.8E-7321335IPR020472G-protein beta WD-40 repeat
SMARTSM003206.2338381IPR001680WD40 repeat
SMARTSM003203.4384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDFDLNGGNK RVFNRLGGSN RPAAAAAAKG SRQEVCSYWR AGRCNRNPCQ FLHRELPGPV  60
SNKRVADESG FAGPSHRRGP GFNGSSSSNT WGRFGGNSRT VVTKTEKVCR YWVDGSCSHG  120
DKCRYLHCWS KGDGFSLLTQ LDGHEKLVSG IALPSGSDKL YTGSKDGTIR VWDCASGQCT  180
SVLNLGAEVG CVINEGPWLL VGMPNLVKAW NMETSVDQSL SGPVGQVYSL VVGTDLLFAG  240
TQDGSILAWR YNAATNCFEP AASLKGHTLA VVTLYVGANR LYSGSMDKSI KVWSLDNLQC  300
IQTLTDHTSV VMSLICWDQF LLSCSLDNTV KIWAAVEGGN LEVTYTHKEE HGVLALCGVH  360
DAEAKPVLLC SCNDSTLRLY DLPSFTERGK IFAKQEIRSI QIGPGGIFFT GDGTGQVKVW  420
KWSTAPTTAM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B1e-16120384175391F-box/WD repeat protein 7
2ovq_B1e-16120384175391F-box/WD repeat protein 7
2ovr_B1e-16120384175391F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612061.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLM4EK320.0M4EK32_BRARP; Uncharacterized protein
STRINGBra029149.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein